SE61:/DS1
From Metabolonote
Sample Set Information
| ID | SE61 |
|---|---|
| Title | LC-MS analysis of parsley |
| Description | Comprehensive analysis of metabolites in parsley (Petroselium crispum, Paramount) was performed by several combination of sample preparation and analytical conditions.
Parsley was hydroponically grown in a greenhouse (S11-S13) or a cultivation shelf (S21-S26) using control medium and stable isotope (15N or 34S)-containing medium. |
| Authors | Sakurai N, Suda K (Kazusa DNA Research Insitute) |
| Reference | Akimoto N, Ara T, Nakajima D, Suda K, Ikeda C, Takahashi S, Muneto R, Yamada M, Suzuki H, Shibata D and Sakurai N (2017) FlavonoidSearch: A system for comprehensive flavonoid annotation by mass spectrometry. Scientific Reports 7: 1243 |
| Comment |
Data Analysis Details Information
| ID | DS1 |
|---|---|
| Title | PowerGetBatch 1: manual curation, MSn from raw |
| Description | The raw data generated by Xcalibur software were converted to mzXML format using MSConvert function of ProteoWizard software ver.3.0.6447. Metabolite peaks were detected by PowerGet software which is slightly modified from the original to enable batch processing (PowerGetBatch).
False positive peaks extracted from background noise signals and peaks detected in the mock samples were manually removed. The MS2 and MS3 spectra obtained within the full width at half maximum height of the peaks that eluted in a range from 15 to 90 min and annotated as proton adduct were extracted from the mzXML file using an in-house Java program. The results were exported to text files in TogoMD format. |
| Comment_of_details |
