SE190:/S1

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Sample Set Information

ID TSE1349
Title Novel insights into the function of Arabidopsis R2R3-MYB transcription factors regulating aliphatic glucosinolate biosynthesis.
Description Arabidopsis transcription factors, MYB28, MYB29 and MYB76, positively regulate aliphatic glucosinolate (AGSL) biosynthesis. Mutual transcriptional regulation among these MYB genes makes it difficult to elucidate their individual function simply by analyzing knock-out mutants or ectopically overexpressing lines of these genes. In this study, we constructed transgenic lines expressing each MYB gene driven by its own promoter in the myb28myb29 background, where the expression of the endogenous MYB28, MYB29 and MYB76 was repressed with no AGSL accumulation. In leaves, transgenic MYB28 expression activated AGSL biosynthetic genes and restored accumulation of AGSLs with short side chains. Transgenic MYB29 expression activated the same biosynthetic pathway, but induction of the genes involved in side chain elongation was weaker than that by MYB28, resulting in a weaker recovery of AGSLs. Neither MYB28 nor MYB29 recovered long-chain AGSL accumulation. MYB76 was considered to require both MYB28 and MYB29 for its normal level of expression in leaves, and could not activate AGSL biosynthesis on its own. Interestingly, the accumulation in seeds of long- and short-chain AGSLs was restored by transgenic expression of MYB28 and MYB76, respectively. A sulfur stress experiment indicated that MYB28 expression was induced by sulfur deficiency, while the expression levels of MYB29 and MYB76 were positively correlated with sulfur concentration. This study illustrated how the individual MYBs work in regulating AGSL biosynthesis when expressed alone under normal transcriptional regulation.
Authors Li, Y., Sawada, Y., Hirai, A., Sato, M., Kuwahara, A., Yan, X. and Hirai, M.Y.
Reference Plant Cell Physiol. 2013 Aug;54(8):1335-44. doi: 10.1093/pcp/pct085
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Sample Information

ID S1
Title Arabidopsis thaliana
Organism - Scientific Name Arabidopsis thaliana
Organism - ID NCBI taxonomy:3702
Compound - ID
Compound - Source
Preparation Plant materials

A double knock-out mutant myb28myb29 was generated by crossing two single mutants, myb28 and myb29, possessing the T-DNA insertion and transposon element in At5g61420 (SALK_136312) and At5g07690 (SM_3_34316), respectively. Note that the combination of single mutants was different from that in the previous studies (Sønderby et al. 2007, Beekwilder et al. 2008). To construct the ProMYB:MYB lines, about 4,000 (for ProMYB28:MYB28 and ProMYB29:MYB29) or 3,000 (for ProMYB76:MYB76) bp fragments spanning the promoters (2,683, 2,674 and 2,000 bp for MYB28, MYB29 and MYB76, respectively) and the coding regions of MYB28, MYB29 and MYB76 were amplified by PCR by using Arabidopsis genomic DNA (Supplementary Fig. S2). Primers used for amplification of the ProMYB28:MYB28, ProMYB29:MYB29 and ProMYB76:MYB76 fragments are shown in Supplementary Table S2. The 3′-UTRs of MYB genes were not included in the amplified fragments. They were then cloned into a binary vector pGWB1 (Nakagawa et al. 2007). The resulting vectors were transformed into Agrobacterium tumefaciens EHA101 and then used for transformation of Arabidopsis myb28myb29. Transgenic lines were selected on agar-solidified 1/2 Murashige and Skoog medium with 50 mg l−1 kanamycin or 20 mg l−1 hygromycin. The homozygous lines were used for subsequent analyses.

Plant growth conditions
The wild type (Columbia), myb28myb29 and seven lines of transgenic Arabidopsis (ProMYB28:MYB28_1, ProMYB28:MYB28_2, ProMYB28:MYB28_3, ProMYB29:MYB29_1, ProMYB29:MYB29_2, ProMYB76:MYB76_1 and ProMYB76:MYB76_2) were grown for 3 weeks in a growth chamber at 22°C under fluorescent light with a light/dark cycle of 16 h/8 h. Agar-solidified 1/2 Murashige and Skoog medium with 1% sucrose was utilized for plant cultivation. For the sulfur stress experiment, the medium containing 1.5 mM sulfate (Full S) was adjusted to 0.15 mM (1/10 S) and 0 mM (0 S) sulfate by substitution of MgSO4 by MgCl2.

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