SE218:/S04/M01
From Metabolonote
Sample Set Information
| ID | SE218 |
|---|---|
| Title | Metabolome analysis of Carica papaya fruit |
| Description | Investigation of Carica papaya fruit metabolites. 2 tissue (pulp and peel), 2 developmental stages (unripe and ripe) and 4 replicates data are examined. |
| Authors | Yasuhide Hiraga 1,2, Takeshi Ara 2,3, Nao Sato 4, Nayumi Akimoto 2, Kenjiro Sugiyama 4, Hideyuki Suzuki 1,2, Kota Kera 5;1 HIRATA Corporation, 2 Kazusa DNA Research Institute, 3 Kyoto University, 4 Kogakuin University, 5 Tokyo University of Agriculture |
| Reference | Hiraga Y. et al. (2021) Bioscience, Biotechnology, and Biochemistry 85(5) 1194-1204 |
| Comment |
Sample Information
| ID | S04 |
|---|---|
| Title | Carica papaya L. ripe fruit peel |
| Organism - Scientific Name | Carica papaya L. |
| Organism - ID | NCBI taxonomy:3649 |
| Compound - ID | |
| Compound - Source | |
| Preparation | Ripe and unripe papaya (Carica papaya L.) fruits were obtained from local markets in Okinawa prefecture. |
| Sample Preparation Details ID | |
| Comment |
Analytical Method Information
| ID | M01 |
|---|---|
| Title | LC-Orbitrap-MS, ESI Positive analysis |
| Method Details ID | MS1 |
| Sample Amount | |
| Comment | [MassBase ID] MDLC1_48656 |
The raw (binary) and near-raw (text) files of this analysis are available at MassBase.
Analytical Method Details Information
| ID | MS1 |
|---|---|
| Title | LC-Orbitrap-MS ESI positive method |
| Instrument | Ultimate 3000 RSLC (Thermo Fisher Scientific), Q Exactive MS (Thermo Fisher Scientific) |
| Instrument Type | LC-Orbitrap-MS |
| Ionization | ESI |
| Ion Mode | Positive |
| Description | The samples were cut into small pieces and then frozen in liquid N2 and resulting powder (100mg) are solved in 300uL 100% methanol solution and homogenized with zirconia beads in a TissueLyser II. The supernatant was filtered using a Mono-Spin C18 column and filtered through a 0.2 µm polyvinylidene difluoride (PVDF) membrane. 2µL of sample is injected into HPLC. HPLC conditions: Ultimate 3000 RSLC (Thermo Fisher Scientific Inc.), Column: InertSustain AQ-C18 (column size: 2.1 × 150 mm; particle size: 3.0 μm; GL Science Inc.), Solvent: A; 0.1% formic acid in water, B; 0.1% formic acid in acetonitrile, Gradient: 2% B for 0 to 3 min, 2 to 98% B for 3 to 30 min, 98% B for 30 to 35 min, and 2% B for 35 to 40 min. Column temp.: 40 degree C, Flow rate=0.2mL/min, PDA: 190-950 nm (2 nm step). Orbitrap-MS conditions: Q Exactive Mass Spectrometer (Thermo Fisher Scientific), ESI positive mode, spray voltage: 3.2 kV, capillary temperature: 300 degree C, Full mass scan condition (scan range: m/z 80–1200, resolution: 70000 at m/z 200, AGC target: 1e6), MS/MS conditoin: up to 10 data-dependent HCD MS2 scans (AGC target: 1e5, max IT: 50 ms, resolution: 17500 at m/z 200, isolation window: m/z 2.0, stepped (N)CE: 10/50/80, underfill ratio: 5%, and dynamic exclusion: 20 s). |
| Comment_of_details |
