SE9:/S01/M02/D01
From Metabolonote
Sample Set Information
| ID | SE9 |
|---|---|
| Title | Marchantia polymorpha metabolite analysis |
| Description | Investigation of Marchantia polymorpha L. Tak-1 (male) metabolites. 2 growth conditions (suc + or -) and 2 replicates data are examined. |
| Authors | Kimitsune Ishizaki 2, Takeshi Ara 1, Daisuke Nakajima 1, Mitsuo Enomoto 1, Nozomu Sakurai 1, Hideyuki Suzuki 1, Koei Okazaki 1, Takayuki Kohchi 2, Daisuke Shibata 1, 1: Kazusa DNA Research Institute, 2: Graduate School of Biosutdies, Kyoto University |
| Reference | Direct Submittion |
| Comment | version 3 |
MarpolBase
Sample Information
| ID | S01 |
|---|---|
| Title | Marchantia polymorpha L. Tak-1 (male) |
| Organism - Scientific Name | Marchantia polymorpha |
| Organism - ID | NCBI taxonomy:3197 |
| Compound - ID | |
| Compound - Source | |
| Preparation | Marchantia polymorpha L. Tak-1 (male) are grown on culture plate filled by 1/2Gamborg's B5 culture with 1% sucrose and agar in an incubator. Whole plants are harvested. |
| Sample Preparation Details ID | |
| Comment | [KomicMarket ID] KSBA_30 |
Analytical Method Information
| ID | M02 |
|---|---|
| Title | LC-FTICR-MS, ESI Positive analysis |
| Method Details ID | MS2 |
| Sample Amount | 6.7mg |
| Comment | [MassBase ID] MDLC1_17051 |
The raw (binary) and near-raw (text) files of this analysis are available at MassBase.
Analytical Method Details Information
| ID | MS2 |
|---|---|
| Title | LC-FT-ICR-MS ESI positive method 2 |
| Instrument | Agilent1100 HPLC (Agilent), LTQ-FT (Thermo Fisher Scientific) |
| Instrument Type | LC-FTICR-MS |
| Ionization | ESI |
| Ion Mode | Positive |
| Description | Sample is frozen by liquid N2 and resulting powder (250mg) are solved in 750uL 100% methanol solution. Cells are homogenized by TissueLyser (QUIAGEN, 25frequency, 2min) and centrifuged (15000rpm, 10min, 4 degree C). 20uL sample is injected into HPLC after 0.2um membrane filter treatment. HPLC conditions: Agilent 1100 series (Agilent), Column: TSKgel-100V (4.6 x 250 mm, 5 micrometer; TOSOH), Solvent: A; 0.1% formic acid aq. B; ACN (addition 0.1% formic acid fc.), Gradient: (B);3 to 97% (0.0 to 45.0 min), 97% (45.1 to 50.0 min), 3% (50.1 to 57.0 min), Column temp.: 40 degree C, Flow rate=0.5mL/min, PDA: 200-650 nm (2 nm step). FT-ICR-MS conditions: Filter 1: FTMS + c norm !corona !pi res=100000 o(100.0-1500.0); 2: ITMS + c norm !corona !pi Dep MS/MS Most intense ion from (1); 3: ITMS + c norm !corona !pi Dep MS/MS 2nd most intense ion from (1); 4: ITMS + c norm !corona !pi Dep MS/MS 3rd most intense ion from (1); 5: ITMS + c norm !corona !pi Dep MS/MS 4th most intense ion from (1); 6: ITMS + c norm !corona !pi Dep MS/MS 5th most intense ion from (1), Reject Mass List: 235.2000, 376.0400, 609.2800, 810.4100, 1123.6800. |
| Comment_of_details |
Data Analysis Information
| ID | D01 |
|---|---|
| Title | PowerGet data analysis for Bio-MassBank |
| Data Analysis Details ID | DS1 |
| Recommended decimal places of m/z | 6|ITMS 2 |
| Comment |
Data Analysis Details Information
| ID | DS1 |
|---|---|
| Title | PowerGet analysis for annotation of peaks with MS/MS (A3) |
| Description | Raw data files are converted to text file by MSGet software without cut off value and peaks are extracted from the text files by PowerFT with parameters (intensity cut off=5000, peak selection filter is default, intensity cut off in peak assignment=1000). The replicates data are aligned by PowerMatch with blank data. The alignment is manually edited. Assigned peaks observed in multiple replicate samples are selected for annotation process. Assigned peaks with clear MS2 data are selected for the registration of Bio-MassBank. |
| Comment_of_details |
