SE196:/
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lower pageS01, S02, S03, S04, S05, S06, S07, S08, S09, S10, S11, S14, S15, S16, S17, S18, S19, S20, S21, S22, S23, S24, S25, S26, S27, S28, S29, S31, S32, S33, S34, S35, S36, S37, S38, S39, S40, S41, S42, S43, S44, S45, S46, S63, S64, S65, S67, S68, S69, S70, S71, S72, S73, S74, S75, S76, S78, S79, S80, S81, S82, S83
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Sample Set Information
| ID | SE196 |
|---|---|
| Title | A lipidome atlas in MS-DIAL 4 |
| Description | We formulated mass spectral fragmentations of lipids across 117 lipid subclasses and included ion mobility tandem mass spectrometry (MS/MS) to provide a comprehensive lipidome atlas with retention time, collision cross section and MS/MS information. Using human, murine, algal, and plant biological samples, we annotated and semi-quantified 8,051 lipids by MS-DIAL 4 (http://prime.psc.riken.jp/) with a 1–2% estimated false discovery rate, using the lipidomics standards initiative level 2 or 3 definitions. |
| Authors | Hiroshi Tsugawa, Kazutaka Ikeda, Mikiko Takahashi, Aya Satoh, Yoshifumi Mori, Haruki Uchino, Nobuyuki Okahashi, Yutaka Yamada, Ipputa Tada, Paolo Bonini, Yasuhiro Higashi, Yozo Okazaki, Zhiwei Zhou, Zheng-Jiang Zhu, Jeremy Koelmel, Tomas Cajka, Oliver Fiehn, Kazuki Saito, Masanori Arita, and Makoto Arita |
| Reference | Tsugawa, H. et al. A lipidome atlas in MS-DIAL 4. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0531-2 |
| Comment |
The raw data files are available at DROP Met web site in PRIMe database of RIKEN.
- SE196 : [ A lipidome atlas in MS-DIAL 4 ]
- S01 : [ 1_Mouse_Adrenal gland (RIKEN IMS Sciex Mouse tissues) ]
- S02 : [ 2_Mouse_Brain (RIKEN IMS Sciex Mouse tissues) ]
- S03 : [ 3_Mouse_Brown adipose tissue (RIKEN IMS Sciex Mouse tissues) ]
- S04 : [ 4_Mouse_Eye (RIKEN IMS Sciex Mouse tissues) ]
- S05 : [ 5_Mouse_Kidney (RIKEN IMS Sciex Mouse tissues) ]
- S06 : [ 6_Mouse_Liver (RIKEN IMS Sciex Mouse tissues) ]
- S07 : [ 7_Mouse_Skeletal muscle (RIKEN IMS Sciex Mouse tissues) ]
- S08 : [ 8_Mouse_Skin (RIKEN IMS Sciex Mouse tissues) ]
- S09 : [ 9_Mouse_Small intestine (RIKEN IMS Sciex Mouse tissues) ]
- S10 : [ 10_Mouse_Testis (RIKEN IMS Sciex Mouse tissues) ]
- S11 : [ 11_Mouse_White adipose tissue (RIKEN IMS Sciex Mouse tissues) ]
- S14 : [ 14_Mouse cultured cell_3T3-L1 (RIKEN IMS Sciex Cultured cells) ]
- S15 : [ 15_Mouse cultured cell_C2C12 (RIKEN IMS Sciex Cultured cells) ]
- S16 : [ 16_Human cultured cell_HEK293 (RIKEN IMS Sciex Cultured cells) ]
- S17 : [ 17_Human cultured cell_HeLa (RIKEN IMS Sciex Cultured cells) ]
- S18 : [ 18_Mouse_Brain (RIKEN IMS Sciex Mouse tissues) ]
- S19 : [ 19_Mouse_Heart (RIKEN IMS Sciex Mouse tissues) ]
- S20 : [ 20_Mouse_Kidney (RIKEN IMS Sciex Mouse tissues) ]
- S21 : [ 21_Mouse_Liver (RIKEN IMS Sciex Mouse tissues) ]
- S22 : [ 22_Mouse_Lung (RIKEN IMS Sciex Mouse tissues) ]
- S23 : [ 23_Mouse_Macrophage (RIKEN IMS Sciex Mouse tissues) ]
- S24 : [ 24_Mouse_Plasma (RIKEN IMS Sciex Mouse tissues) ]
- S25 : [ 25_Mouse_Skeletal muscle (RIKEN IMS Sciex Mouse tissues) ]
- S26 : [ 26_Mouse_Small intestine (RIKEN IMS Sciex Mouse tissues) ]
- S27 : [ 27_Mouse_Spleen (RIKEN IMS Sciex Mouse tissues) ]
- S28 : [ 28_Mouse_White adipose tissue (RIKEN IMS Sciex Mouse tissues) ]
- S29 : [ 29_30_Plant_Arabidopsis thaliana (Bruker Plants) ]
- S31 : [ 31_47_Mouse_Adrenal gland (Bruker Mouse tissues) ]
- S32 : [ 32_48_Mouse_Brain (Bruker Mouse tissues) ]
- S33 : [ 33_49_Mouse_Eye (Bruker Mouse tissues) ]
- S34 : [ 34_50_Mouse_Feces (Bruker Mouse tissues) ]
- S35 : [ 35_51_Mouse_Heart (Bruker Mouse tissues) ]
- S36 : [ 36_52_Mouse_Kidney (Bruker Mouse tissues) ]
- S37 : [ 37_53_Mouse_Large intestine (Bruker Mouse tissues) ]
- S38 : [ 38_54_Mouse_Liver (Bruker Mouse tissues) ]
- S39 : [ 39_55_Mouse_Lung (Bruker Mouse tissues) ]
- S40 : [ 40_56_Mouse_Pancreas (Bruker Mouse tissues) ]
- S41 : [ 41_57_Mouse_Plasma (Bruker Mouse tissues) ]
- S42 : [ 42_58_Mouse_Skeletal muscle (Bruker Mouse tissues) ]
- S43 : [ 43_59_Mouse_Skin (Bruker Mouse tissues) ]
- S44 : [ 44_60_Mouse_Small intestine (Bruker Mouse tissues) ]
- S45 : [ 45_61_Mouse_Spleen (Bruker Mouse tissues) ]
- S46 : [ 46_62_Mouse_Testis (Bruker Mouse tissues) ]
- S63 : [ 63_Plant_Arabidopsis thaliana (Waters Plants) ]
- S64 : [ 64_Plant_Oryza sativa (Waters Plants) ]
- S65 : [ 65_Plant_Solanum melongena (Waters Plants) ]
- S67 : [ 67_Algae_Chlamydomonas reinhardtii (UC Davis Sciex Algaes) ]
- S68 : [ 68_Algae_Auxenochlorella protothecoides (UC Davis Sciex Algaes) ]
- S69 : [ 69_Algae_Chlorella sorokiniana (UC Davis Sciex Algaes) ]
- S70 : [ 70_Algae_Chlorella variabilis (UC Davis Sciex Algaes) ]
- S71 : [ 71_Algae_Dunaliella salina (UC Davis Sciex Algaes) ]
- S72 : [ 72_Algae_Euglena gracilis (UC Davis Sciex Algaes) ]
- S73 : [ 73_Algae_Nannochloropsis oculata (UC Davis Sciex Algaes) ]
- S74 : [ 74_Algae_Pavlova lutheri (UC Davis Sciex Algaes) ]
- S75 : [ 75_Algae_Pleurochrysis carterae (UC Davis Sciex Algaes) ]
- S76 : [ 76_77_Human_Plasma (SRM1950) (RIKEN IMS Sciex SRM1950 plasma) ]
- S78 : [ 78_Human_Plasma (SRM1950) (Waters SRM1950 plasma) ]
- S79 : [ 79_Human_Plasma (SRM1950) (Thermo SRM1950 plasma) ]
- S80 : [ 80_Human_Plasma (SRM1950) (Agilent SRM1950 plasma) ]
- S81 : [ 81_Human_Plasma (SRM1950) (UC Davis Sciex SRM1950 plasma) ]
- S82 : [ 82_Mouse_Feces (RIKEN IMS Sciex Mouse tissues) ]
- S83 : [ 83_84_Human_Plasma (SRM1950) (Bruker SRM1950 plasma) ]
- MS01 : [ Method 1: SCIEX TripleTOF DDA high mass range method ]
- MS02 : [ Method 2: SCIEX TripleTOF DDA normal mass range method ]
- MS03 : [ Method 3: Bruker timsTOF Pro DDA for plant lipidomics ]
- MS04 : [ Method 4: Bruker timsTOF Pro PASEF for plant lipidomics ]
- MS05 : [ Method 5: Bruker timsTOF Pro DDA for mouse tissue lipidomics ]
- MS06 : [ Method 6: Bruker timsTOF Pro PASEF for mouse tissue lipidomics ]
- MS07 : [ Method 7: Waters XevoG2 QTOF DDA for plant lipidomics ]
- MS08 : [ Method 8: SCIEX TripleTOF 6600 SWATH for NIST SRM 1950 human plasma ]
- MS09 : [ Method 9: Thermo Q Exactive Plus DDA for NIST SRM 1950 human plasma ]
- MS10 : [ Method 10: Agilent 6546 LC-QTOF/MS DDA for NIST SRM 1950 human plasma ]
